A pipeline to translate glycosaminoglycan sequences into 3D models. Application to the exploration of glycosaminoglycan conformational space

Nikos Karamanos , Zoi Piperigkou , Achilleas Theocharis , Hideto Watanabe , Marco Franchi , Stéphanie Baud (1) , Stephane Brezillon (2) , Martin Götte (3) , Alberto Passi , Davide Vigetti , Ralph Sanderson , Thomas Neill , Thomas Iozzo , Olivier Clerc (4) , Julien Mariethoz (5) , Alain Rivet (6) , Frederique Lisacek (5) , Serge Pérez (7) , Sylvie Ricard-Blum (8)

1 MEDyC - Matrice extracellulaire et dynamique cellulaire - UMR 7369
2 Laboratoire de Biochimie Médicale et Biologie Moléculaire
3 Department of Obstetrics and Gynecology
4 LISA - Lieux, Identités, eSpaces, Activités
5 SIB - Swiss Institute of Bioinformatics [Lausanne]
6 CREOP - Centre de Recherches sur l'Entreprise, les Organisations et le Patrimoine
7 FaMAF - Facultad de Matemática, Astronomía y Física [Cordoba]
8 ASPE - Assemblages Supramoléculaires Péricellulaires et Extracellulaires

Domains: Life Sciences [q-bio]; Biochemistry, Molecular Biology; Biochemistry [q-bio.BM]

Nikos Karamanos, Zoi Piperigkou, Achilleas Theocharis, Hideto Watanabe, Marco Franchi, et al.. A pipeline to translate glycosaminoglycan sequences into 3D models. Application to the exploration of glycosaminoglycan conformational space. Glycobiology, 2019, 29 (1), pp.36-44. ⟨10.1093/glycob/cwy084⟩. ⟨hal-02109760⟩